fiji-cmtk-gui

Working version of a simple GUI frontend for CMTK image registration tools in Fiji

Install

• Install Fiji
• Enable the CMTK Registration update site (http://sites.imagej.net/Jefferis), by following these detailed instructions. The update window should look something like this: .
• Run Plugins>CMTK Registration>Install CMTK to install CMTK

Use

• CMTK Registration GUI is the main entry point
• See Jefferis Lab Wiki

Update

• Use the Fiji updater to update files (but see below for Developer Install/Update)
• To update the CMTK registration software, choose Install CMTK
  • This will compare the current version on the CMTK website with the installed version and offer to update if appropriate.

Problems

• If you have trouble please check the list of previously reported bugs. There may already be a solution.
• See also the NITRC CMTK User Forum

Developer Install

• Download the zip file for this repository
• Expand the zip file
• Rename the newly expanded folder to CMTK_Registration
• Move this inside the plugins subfolder of Fiji
  • To see this folder on a Mac you need to show Fiji in the Finder
  • Then Right Click and choose Show Package Contents
  • then navigate to the plugins subfolder
• (Re)start Fiji
• Choose Plugins ... CMTK Registration ... Install CMTK

Developer Update

• To update the code for this GUI, choose Update to Development CMTK GUI