digitalcytometry

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4 repositories

spatialecotyper
Public
Spatial EcoTyper is a machine learning framework for systematic identification of spatially distinct multicellular communities from single-cell spatial transcriptomics data.
integration single-cell spatial-transcriptomics tumor-microenvironment multicellular
R
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Other
•0•1•0•0•Updated Dec 13, 2024Dec 13, 2024
cytotrace2
Public
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
R
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Other
•8•108•8•2•Updated Oct 14, 2024Oct 14, 2024
cytospace
Public
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
Python
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Other
•19•118•8•0•Updated Apr 23, 2024Apr 23, 2024
ecotyper
Public
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
tumor deconvolution bulk-rna-seq microenvironment single-cell
R
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Other
•41•190•8•0•Updated Mar 28, 2024Mar 28, 2024