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Pull requests: nf-core/tools

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Pull requests list

Update python:3.12-slim Docker digest to 10f3aaa
#3381 opened Jan 2, 2025 by renovate bot Loading…
1 task
1
Update dependency textual to v1
#3380 opened Jan 1, 2025 by renovate bot Loading…
1 task
Update pre-commit hook pre-commit/mirrors-mypy to v1.14.1
#3379 opened Jan 1, 2025 by renovate bot Loading…
1 task
1
Update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
Update dependency textual to v0.89.1
#3377 opened Jan 1, 2025 by renovate bot Loading…
1 task
Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.6
#3376 opened Jan 1, 2025 by renovate bot Loading…
1 task
1
Allow nf-core pipelines download -r to download commits download nf-core download enhancement
#3374 opened Dec 20, 2024 by muffato Loading…
1 of 4 tasks
1
run pre-comit when rendering template for pipelines sync
#3371 opened Dec 20, 2024 by mirpedrol Loading… 3.1.2
2
bump to 3.2.0dev
#3370 opened Dec 20, 2024 by mirpedrol Loading…
1
Fix usage of cache path and implement parallized testing WIP Work in progress
#3291 opened Nov 21, 2024 by mashehu • Draft
Template: Add gpu profile
#3272 opened Nov 7, 2024 by mashehu Loading… 3.2
16
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.2
10
1929: local modules use remote format from template
#3256 opened Oct 28, 2024 by awgymer • Draft
4 tasks
7
Container cache download download nf-core download WIP Work in progress
#3163 opened Sep 7, 2024 by muffato • Draft
1 of 4 tasks
3.2
2
@muffato
14
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
6
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
2
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
feat: Install subworkflows with modules from different remotes enhancement
#3083 opened Jul 29, 2024 by jvfe Loading…
2 of 4 tasks
3.3
@jvfe
27
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller Loading…
@edmundmiller
1
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.3
2
Allow nf-core download -r to download commits awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. download nf-core download Stale
#2906 opened Apr 4, 2024 by fellen31 • Draft
4 tasks
5
ProTip! no:milestone will show everything without a milestone.