Integrating ruff precommit #1953

	name: Deploy and test ersilia on PR

	on:
	pull_request:
	branches: [ master ]
	push:
	branches: [ master ]
	workflow_dispatch:

	permissions:
	contents: read

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # [email protected]
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: "3.10.10"

	- name: Install dependencies
	run: \|
	conda init
	conda install git-lfs -c conda-forge
	git-lfs install
	conda install gh -c conda-forge

	- name: Install Ersilia
	run: \|
	source activate
	python --version
	echo "After conda init"
	conda init
	python -m pip install -e .[test]

	- name: Run Ruff
	run: ruff check --output-format=github .

	- name: Hub catalog
	run: \|
	ersilia catalog --hub

	- name: Fetch model from GitHub
	run: \|
	ersilia -v fetch molecular-weight --from_github
	echo "Serving molecular-weight model."
	ersilia serve molecular-weight --track
	ersilia info
	ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" \| grep "180.15899"
	ersilia close

	- name: Fetch model from S3
	run: \|
	ersilia -v fetch molecular-weight --from_s3
	echo "Serving molecular-weight model."
	ersilia serve molecular-weight --track
	ersilia info
	ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" \| grep "180.15899"
	ersilia close

	- name: Fetch model from DockerHub
	run: \|
	ersilia -v fetch molecular-weight --from_dockerhub
	echo "Serving molecular-weight model." --track
	ersilia serve molecular-weight
	ersilia info
	ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" \| grep "180.15899"
	ersilia close

	- name: Local catalog
	run: \|
	ersilia catalog --local

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