Aider #80

	name: Scaden CI
	# This workflow installs Scaden, creates example data and performs all
	# steps of the Scaden workflow: simulation, processing, training and prediction
	on: [push, pull_request]

	jobs:
	run_scaden:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: "3.8"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel twine

	- name: Install Scaden
	run: \|
	pip install .

	- name: Create example data
	run: \|
	mkdir example_data
	scaden example --out example_data/

	- name: Simulate training data
	run: \|
	scaden simulate --data example_data/ --pattern '*_counts.txt'

	- name: Scaden process
	run: \|
	scaden process data.h5ad example_data/example_bulk_data.txt

	- name: Scaden training
	run: \|
	scaden train processed.h5ad --steps 100 --model_dir model

	- name: Scaden predict
	run: \|
	scaden predict --model_dir model example_data/example_bulk_data.txt

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