Bundler::GemNotFound: Could not find ... in locally installed gems

[dinosaurjunior]

Hello,

I am using Warbler 2.0.5 with JRuby 9.4.2.0. When I generate a WAR, it will work fine on the system I generated it.

If I use that war on a different system, I will get an error that my gems are missing however they seem to be there in the WAR archive.

02-Apr-2023 11:21:13.585 INFO [main] org.apache.catalina.core.ApplicationContext.log ContextListener: contextInitialized()
02-Apr-2023 11:21:13.585 INFO [main] org.apache.catalina.core.ApplicationContext.log SessionListener: contextInitialized()
02-Apr-2023 11:21:13.585 INFO [main] org.apache.catalina.core.ApplicationContext.log ContextListener: attributeAdded('StockTicker', 'async.Stockticker@186f8716')
02-Apr-2023 11:29:28.491 INFO [http-nio-8080-exec-5] org.apache.catalina.core.ApplicationContext.log INFO: jruby 9.4.2.0 (3.1.0) 2023-03-08 90d2913fda Java HotSpot(TM) 64-Bit Server VM 25.361-b09 on 1.8.0_361-b09 +jit [x86_64-mswin32]
02-Apr-2023 11:29:28.493 INFO [http-nio-8080-exec-5] org.apache.catalina.core.ApplicationContext.log INFO: using a shared (threadsafe!) runtime
02-Apr-2023 11:29:37.165 INFO [http-nio-8080-exec-5] org.apache.catalina.core.ApplicationContext.log An exception happened during JRuby-Rack startup
Could not find rack-2.2.6.4, sinatra-3.0.5, mustermann-3.0.0, rack-protection-3.0.5, tilt-2.0.11 in locally installed gems
--- System
jruby 9.4.2.0 (3.1.0) 2023-03-08 90d2913fda Java HotSpot(TM) 64-Bit Server VM 25.361-b09 on 1.8.0_361-b09 +jit [x86_64-mswin32]
Time: 2023-04-02 11:29:37 -0700
Server: Apache Tomcat/9.0.73
jruby.home: uri:classloader://META-INF/jruby.home

--- Context Init Parameters:
public.root = /
rack.env = production

--- Backtrace
Bundler::GemNotFound: Could not find rack-2.2.6.4, sinatra-3.0.5, mustermann-3.0.0, rack-protection-3.0.5, tilt-2.0.11 in locally installed gems
materialize at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:507
specs at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:187
specs_for at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:244
setup at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/runtime.rb:18
setup at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:161
require at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:186

at C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:2
instance_eval at org/jruby/RubyBasicObject.java:2506
instance_eval at org/jruby/RubyBasicObject.java:2534
initialize at uri:classloader:/vendor/rack-1.6.13/rack/builder.rb:55
new at org/jruby/RubyClass.java:931
at C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:1

--- RubyGems
Gem.dir: uri:classloader:/META-INF/jruby.home/lib/ruby/gems/shared
Gem.path:
C:\Windows\ServiceProfiles\LocalService/.local/share/gem/jruby/3.1.0
uri:classloader:/META-INF/jruby.home/lib/ruby/gems/shared
Activated gems:
jar-dependencies-0.4.1
did_you_mean-1.6.1
stringio-3.0.5-java
bundler-2.3.25
fileutils-1.6.0
time-0.1.0
uri-0.11.0

--- Bundler
Bundler.bundle_path: uri:classloader:/META-INF/jruby.home/lib/ruby/gems/shared
Bundler.root: C:/Program Files/Apache Software Foundation/Tomcat 9.0/webapps/stock-service/WEB-INF
Gemfile: C:/Program Files/Apache Software Foundation/Tomcat 9.0/webapps/stock-service/WEB-INF/Gemfile
Settings:
gemfile = C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\Gemfile
without = [:development, :test, :assets]

--- JRuby-Rack Config
compat_version =
default_logger = org.jruby.rack.logging.StandardOutLogger@5704ad4a
equals = <error: >
err = org.apache.tomcat.util.log.SystemLogHandler@261ee264
filter_adds_html = true
filter_verifies_resource = false
ignore_environment = false
initial_memory_buffer_size =
initial_runtimes =
jms_connection_factory =
jms_jndi_properties =
logger = org.jruby.rack.logging.ServletContextLogger@30c84ac4
logger_class_name = servlet_context
logger_name = jruby.rack
maximum_memory_buffer_size =
maximum_runtimes =
num_initializer_threads =
out = org.apache.tomcat.util.log.SystemLogHandler@a36f801
rackup =
rackup_path =
rewindable = true
runtime_arguments =
runtime_environment =
runtime_timeout_seconds =
serial_initialization = false
servlet_context = org.apache.catalina.core.ApplicationContextFacade@592043c7
throw_init_exception = false

02-Apr-2023 11:29:37.165 SEVERE [http-nio-8080-exec-5] org.apache.catalina.core.ApplicationContext.log ERROR: initialization failed
org.jruby.rack.RackInitializationException: Could not find rack-2.2.6.4, sinatra-3.0.5, mustermann-3.0.0, rack-protection-3.0.5, tilt-2.0.11 in locally installed gems
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:507:in materialize' from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:187:in specs'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:244:in specs_for' from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/runtime.rb:18:in setup'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:161:in setup' from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:186:in require'
from C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:2:in block in <main>' from org/jruby/RubyBasicObject.java:2506:in instance_eval'
from org/jruby/RubyBasicObject.java:2534:in instance_eval' from uri:classloader:/vendor/rack-1.6.13/rack/builder.rb:55:in initialize'
from org/jruby/RubyClass.java:931:in new' from C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:1:in

'

	at org.jruby.rack.RackInitializationException.wrap(RackInitializationException.java:29)
	at org.jruby.rack.RackApplicationFactoryDecorator.init(RackApplicationFactoryDecorator.java:104)
	at org.jruby.rack.RackServletContextListener.contextInitialized(RackServletContextListener.java:50)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4493)
	at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4939)
	at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
	at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:683)
	at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:658)
	at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:662)
	at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1023)
	at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:543)
	at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1689)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:294)
	at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(Unknown Source)
	at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(Unknown Source)
	at org.apache.catalina.manager.ManagerServlet.check(ManagerServlet.java:1615)
	at org.apache.catalina.manager.HTMLManagerServlet.upload(HTMLManagerServlet.java:291)
	at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:209)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:528)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:596)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:209)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:153)
	at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:190)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:178)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:153)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:178)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:153)
	at org.apache.catalina.filters.HttpHeaderSecurityFilter.doFilter(HttpHeaderSecurityFilter.java:126)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:178)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:153)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:167)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:607)
	at org.apache.catalina.valves.RequestFilterValve.process(RequestFilterValve.java:355)
	at org.apache.catalina.valves.RemoteAddrValve.invoke(RemoteAddrValve.java:54)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93)
	at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:673)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
	at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:389)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:926)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1791)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
	at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
	at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.lang.Thread.run(Unknown Source)
Caused by: org.jruby.exceptions.StandardError: (GemNotFound) Could not find rack-2.2.6.4, sinatra-3.0.5, mustermann-3.0.0, rack-protection-3.0.5, tilt-2.0.11 in locally installed gems
	at RUBY.materialize(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:507)
	at RUBY.specs(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:187)
	at RUBY.specs_for(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/definition.rb:244)
	at RUBY.setup(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler/runtime.rb:18)
	at RUBY.setup(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:161)
	at RUBY.require(uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/bundler.rb:186)
	at RUBY.<main>(C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:2)
	at org.jruby.RubyBasicObject.instance_eval(org/jruby/RubyBasicObject.java:2506)
	at org.jruby.RubyBasicObject.instance_eval(org/jruby/RubyBasicObject.java:2534)
	at RUBY.initialize(uri:classloader:/vendor/rack-1.6.13/rack/builder.rb:55)
	at org.jruby.RubyClass.new(org/jruby/RubyClass.java:931)
	at RUBY.<main>(C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\config.ru:1)

In Tomcat:

C:\Users\Administrator>dir "C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\gems\gems"
Volume in drive C has no label.
Volume Serial Number is C683-8D31

Directory of C:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\stock-service\WEB-INF\gems\gems

04/02/2023 01:24 PM

.
04/02/2023 01:24 PM ..
04/02/2023 01:24 PM bundler-2.4.10
04/02/2023 01:24 PM mustermann-3.0.0
04/02/2023 01:24 PM rack-2.2.6.4
04/02/2023 01:24 PM rack-protection-3.0.5
04/02/2023 01:24 PM sinatra-3.0.5
04/02/2023 01:24 PM tilt-2.0.11
0 File(s) 0 bytes
8 Dir(s) 79,136,116,736 bytes free

C:\Users\Administrator>

I am new to Ruby and JRuby, I am sure I am doing something wrong, would appreciate some pointers to the right direction as I really don't know how to troubleshoot this.

Thank you

[dinosaurjunior]

Hello,

I had another go at this.

I am experimenting with the following Rails project:

• https://github.com/projectblacklight/blacklight
• https://rubygems.org/gems/blacklight/versions/7.33.1

I am able to produce a working executable war with the following JRuby version :

• 9.2 (2.5)
• 9.3 (2.6.8)

If I upgrade my project to Ruby 3.1 and switch to JRuby 9.4 then i am getting this message when i run java -jar my.war:

Could not find (List of Gems here) in locally installed gems
Run bundle install to install missing gems.

Note that the project runs perfectly fine when I run it via jruby -S rails server

I couldn't find any JRuby version that supports Rails 2.7, but that's more of a JRuby issue.

I am happy to help if anyone more competent wants to look into this.

Thank you.

[jeremiahlukus]

Im getting the same error updating to jruby 9.4.3.0, and pulling from master

[keeguon]

Just ran into the issue, for information, running rake tasks in an executable WAR using Rails 7 and jRuby 9.4.3.0 works but as soon as you want to boot the application in a Servlet like Tomcat the issue pops up.

[jlahtinen]

We have this in our rails app in file config/warble.rb and it seems to work with warbler from master branch and with jruby 9.4.3.0

If I remember correctly this is related to #430

module FixInit
  def add_init_file(config)
    super
    if @files[config.init_filename]
      contents = @files[config.init_filename].read
      add_before = "require 'bundler/shared_helpers'"
      line_to_add = "Gem.paths = ENV\n"
      @files[config.init_filename] = StringIO.new(contents.gsub(add_before, "#{line_to_add}\\0"))
    end
  end
end

class Warbler::Jar
  prepend FixInit
end

[jeremiahlukus]

Still get this issue.