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60 improve svd pipeline with randomized svd #93

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merged 46 commits into from
Dec 12, 2024

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DSilva27
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This includes various improvements

  • Improved normalization scheme: masking, bfactor sharpening, and downsampling
  • PyDantic used for the inputs, so now some parameters are optional (see the example config file)
  • Removed the power spectrum normalization
  • The SVD is now done in two steps, first each submission gets its own svd, then those eigenvetors are used to compute a common embedding (see paper)
  • Plots are now generated automatically, and there is an option to save them.

DSilva27 and others added 30 commits May 30, 2024 16:49
@DSilva27 DSilva27 linked an issue Aug 28, 2024 that may be closed by this pull request
@DSilva27 DSilva27 changed the base branch from main to dev August 28, 2024 20:06
@DSilva27 DSilva27 merged commit 4602aea into dev Dec 12, 2024
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Improve SVD pipeline
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