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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[tool.hatch.build]
include = [
"src/cryo_challenge",
]
[tool.hatch.build.targets.wheel]
packages = [
"src/cryo_challenge",
]
[project]
name = "cryo-em-heterogeneity-challenge-1"
dynamic = ["version"]
description = ''
readme = "README.md"
requires-python = ">=3.8"
license = "MIT"
keywords = []
authors = [
{ name="Geoffrey Woollard", email="[email protected]" },
{ name="David Silva Sanchez", email="[email protected]"},
{ name="Miro Astore", email="[email protected]"},
{ name="Pilar Cossio", email="[email protected]"},
{ name="Sonya Hanson", email="[email protected]"},
]
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: Implementation :: PyPy",
]
dependencies = [
"torch",
"numpy",
"natsort",
"pandas",
"dataclasses_json",
"mrcfile",
"scipy",
"cvxpy",
"POT",
"aspire",
"jupyter",
"osfclient",
"seaborn",
"ipyfilechooser",
"omegaconf"
]
[project.optional-dependencies]
dev = [
"pytest",
"mypy",
"pre-commit",
"ruff",
]
[project.urls]
Documentation = "https://github.com/flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1/blob/main/README.md"
Issues = "https://github.com/flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1/issues"
Source = "https://github.com/flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1"
[tool.hatch.version]
path = "src/cryo_challenge/__about__.py"
[tool.hatch.envs.types]
extra-dependencies = [
"mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:src/cryo_challenge tests}"
[tool.coverage.run]
source_pkgs = ["cryo_challenge", "tests"]
branch = true
parallel = true
omit = [
"src/cryo_challenge/__about__.py",
]
[tool.coverage.paths]
cryo_challenge = ["src/cryo_challenge", "*/cryo-em-heterogeneity-challenge-1/src/cryo_challenge"]
tests = ["tests", "*/cryo-em-heterogeneity-challenge-1/tests"]
[tool.coverage.report]
exclude_lines = [
"no cov",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]
[project.scripts]
cryo_challenge = "cryo_challenge.command_line:main_commands"