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Command line usage #6

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snehashis-roy opened this issue Jul 19, 2023 · 0 comments
Open

Command line usage #6

snehashis-roy opened this issue Jul 19, 2023 · 0 comments

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@snehashis-roy
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snehashis-roy commented Jul 19, 2023 •
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Hello,
Is there a way to batch the java application using command line in headless mode?
I tried an example like this to run RL decon with 15 iterations

java -jar $HOME/Fiji.app/plugins/DeconvolutionLab_2.jar Run -image $PWD/somefile.tif -psf $PWD/PSF.tif -algorithm RL 15 -out $PWD/1.tif -path $PWD

It did not work. What is the correct command to run the RL decon using batch command line?
Thank you.
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